Index

C

cell_density() (in module monkeybread.calc) (in module monkeybread.plot) cell_neighbor_embedding() (in module monkeybread.plot)

cell_neighbors() (in module monkeybread.calc) cell_neighbors_from_masks() (in module monkeybread.calc) cellular_niches() (in module monkeybread.calc)

E

embedding_filter() (in module monkeybread.plot)

embedding_zoom() (in module monkeybread.plot)

L

ligand_receptor_embedding() (in module monkeybread.plot) ligand_receptor_embedding_zoom() (in module monkeybread.plot) ligand_receptor_scatter() (in module monkeybread.plot) ligand_receptor_score() (in module monkeybread.calc) (in module monkeybread.stat)

ligand_receptor_score_barplot_per_niche() (in module monkeybread.plot) ligand_receptor_score_heatmap_per_niche() (in module monkeybread.plot) ligand_receptor_score_per_niche() (in module monkeybread.calc) load_ligand_receptor_pairs_omnipath() (in module monkeybread.util) load_merscope() (in module monkeybread.util) location_and_density() (in module monkeybread.plot)

M

module monkeybread.calc monkeybread.plot monkeybread.stat monkeybread.util monkeybread.calc module

monkeybread.plot module monkeybread.stat module monkeybread.util module

N

neighborhood_profile() (in module monkeybread.calc) neighbors_profile_matrixplot() (in module monkeybread.plot)

number_of_neighbors() (in module monkeybread.calc) (in module monkeybread.plot) number_of_neighbors_from_masks() (in module monkeybread.calc)

S

shortest_distances() (in module monkeybread.calc) (in module monkeybread.plot) (in module monkeybread.stat)

shortest_distances_pairwise() (in module monkeybread.calc) (in module monkeybread.plot) (in module monkeybread.stat) subset_cells() (in module monkeybread.util)