monkeybread.util.load_ligand_receptor_pairs_omnipath

monkeybread.util.load_ligand_receptor_pairs_omnipath(adata, require_gene=None)

Load ligand-receptor pairs from the Omnipath database that are also in the provided dataset.

Parameters:

• adata (AnnData) – An AnnData object

• require_gene (Optional[str] (default: None)) – Only return ligand-receptor pairs where either the ligand or receptor is this argument

Returns:

: List of ligand-receptor pair tuples