monkeybread

Tool for analyzing cell closeness in spatial transcriptomic data. Developed at Immunitas Therapeutics.

Getting started

Please refer to the documentation. In particular, the

• API documentation.

Installation

You need to have Python 3.8 or newer installed on your system. If you don’t have Python installed, we recommend installing Mambaforge.

There are several alternative options to install monkeybread:

1. Install the latest development version:

pip install git+https://github.com/immunitastx/monkeybread.git@main

Release notes

See the changelog.

Contact

For questions and help requests, you can reach out in the scverse discourse. If you found a bug, please use the issue tracker.

Citation

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