monkeybread.plot.ligand_receptor_scatter

monkeybread.plot.ligand_receptor_scatter(actual_scores, stat_scores, lr_pairs=None, show=True, ax=None, **kwargs)

Plots a scatterplot highlighting the observed ligand-receptor scores and significance.

Uses the results of monkeybread.calc.ligand_receptor_score() and monkeybread.stat.ligand_receptor_score().

Creates a scatterplot where each point is one ligand-receptor pair, the x-axis displays the observed score, and the y-axis displays the p-value from the statistical test.

Parameters:

• actual_scores (Dict[Tuple[str, str], float]) – The observed scores, as calculated by monkeybread.calc.ligand_receptor_score().

• stat_scores (Dict[Tuple[str, str], Tuple[ndarray, float]]) – The permuted scores, as calculated by monkeybread.stat.ligand_receptor_score().

• lr_pairs (Union[Tuple[str, str], List[Tuple[str, str]], None] (default: None)) – A subset of ligand-receptor pairs from actual_scores and stat_scores to plot.

• show (Optional[bool] (default: True)) – Whether to show the plot or return the Axes object.

• ax (Optional[Axes] (default: None)) – An Axes object to add the plots to.

• kwargs – Keyword arguments that will be passed to seaborn.histplot.

Return type:

Optional[Axes]

Returns:

: If show = True, returns nothing. Otherwise, returns the Axes object the plot is contained within.

Example