latest
API
Calculations:
calc
Plotting:
plot
monkeybread.plot.neighbors_profile_matrixplot
monkeybread.plot.cell_density
monkeybread.plot.location_and_density
monkeybread.plot.shortest_distances
monkeybread.plot.shortest_distances_pairwise
monkeybread.plot.cell_neighbor_embedding
monkeybread.plot.number_of_neighbors
number_of_neighbors()
monkeybread.plot.embedding_filter
monkeybread.plot.embedding_zoom
monkeybread.plot.ligand_receptor_scatter
monkeybread.plot.ligand_receptor_embedding
monkeybread.plot.ligand_receptor_embedding_zoom
monkeybread.plot.ligand_receptor_score_barplot_per_niche
monkeybread.plot.ligand_receptor_score_heatmap_per_niche
Statistical Tests:
stat
Utility Functions:
util
Changelog
References
Monkeybread Tutorial
Python
API
monkeybread.plot.number_of_neighbors
Edit on GitHub
monkeybread.plot.number_of_neighbors
monkeybread.plot.
number_of_neighbors
(
neighbor_counts
,
plot
=
'box'
,
stripplot
=
False
,
box_kwargs
=
None
,
strip_kwargs
=
None
,
ylabel
=
None
,
xlabel
=
None
,
ax
=
None
,
show
=
True
)