Index

C

cell_contact() (in module monkeybread.calc) (in module monkeybread.stat) cell_contact_embedding() (in module monkeybread.plot) cell_contact_heatmap() (in module monkeybread.plot)

cell_contact_histplot() (in module monkeybread.plot) cell_transcript_proximity() (in module monkeybread.calc) (in module monkeybread.plot) contact_count() (in module monkeybread.util)

E

embedding_filter() (in module monkeybread.plot)

embedding_zoom() (in module monkeybread.plot)

K

kernel_density() (in module monkeybread.calc) (in module monkeybread.plot)

L

ligand_receptor_scatter() (in module monkeybread.plot) ligand_receptor_score() (in module monkeybread.calc) (in module monkeybread.stat)

load_merscope() (in module monkeybread.util)

M

module monkeybread.calc monkeybread.plot monkeybread.stat monkeybread.util monkeybread.calc module

monkeybread.plot module monkeybread.stat module monkeybread.util module

N

neighborhood_profile() (in module monkeybread.calc)

R

randomize_positions() (in module monkeybread.util)

S

shortest_distances() (in module monkeybread.calc) (in module monkeybread.plot) (in module monkeybread.stat)

subset_cells() (in module monkeybread.util)