monkeybread.plot.cell_contact_histplot

monkeybread.plot.cell_contact_histplot(adata, groupby, contacts, expected_contacts, show=True, ax=None, **kwargs)

Plots a histogram highlighting the observed cell contact compared to permutations.

Uses the results of monkeybread.calc.cell_contact() and monkeybread.stat.cell_contact().

Creates a histogram displaying the distribution of contacts from the permutation test with a line indicating the actual distribution of contact counts.

Parameters

• adata (AnnData) – Annotated data matrix.

• groupby (str) – A column in adata.obs to group cells by.

• contacts (Dict[str, Set[str]]) – The actual cell contacts, as calculated by monkeybread.calc.cell_contact().

• expected_contacts (Tuple[ndarray, float]) – The expected cell contacts, as calculated by monkeybread.stat.cell_contact().

• show (Optional[bool] (default: True)) – Whether to show the plot or return the Axes object.

• ax (Optional[Axes] (default: None)) – An Axes object to add the plots to.

• kwargs – Keyword arguments that will be passed to seaborn.histplot.

Return type

Optional[Axes]

Returns

If show = True, returns nothing. Otherwise, returns the Axes object the plot is contained within.